Berke Lab @ UCSF
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Some Recent Publications

  • Mohebi A, Pettibone J, Hamid A, Wong JM, Vinson L, Patriarchi T, Tian L, Kenendy R, Berke JD. (2019). Dissociable dopamine dynamics for learning and motivation. Nature
  • Berke JD. (2018). What does dopamine mean?. Nature Neuroscience
  • Mallet N, Schmidt R, Leventhal D, Chen F, Amer N, Boraud T, Berke JD. (2016). Arkypallidal Cells Send a Stop Signal to Striatum. Neuron

  • Hamid A, Pettibone JR, Mabrouk OS, Hetrick V, Schmidt R, VanderWeele C, Kennedy RT, Aragona BJ, Berke JD (2015). Mesolimbic dopamine signals the value of work. Nature Neuroscience

  • Schmidt R, Leventhal DK, Mallet N, Chen F, Berke JD (2013). Canceling actions involves a race between basal ganglia pathways. Nature Neuroscience.

  • Leventhal DK, Gage GJ, Schmidt R, Pettibone JR, Case AC, Berke JD (2012). Basal ganglia beta oscillations accompany cue utilization. Neuron.

  • Gage GJ, Stoetzner CR, Wiltschko AB, Berke JD (2010). Selective activation of striatal fast-spiking interneurons during choice execution. Neuron.
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Full list of publications (Google Scholar)
Daniel Egert, Jeffrey R Pettibone, Stefan Lemke, Paras R Patel, Ciara M Caldwell, Dawen Cai, Karunesh Ganguly, Cynthia A Chestek, Joshua D Berke. Cellular-scale silicon probes for high-density, precisely localized neurophysiology  (2020). Journal of Neurophysiology

Tommaso Patriarchi, Ali Mohebi, Junqing Sun, Aaron Marley, Ruqiang Liang, Chunyang Dong, Kyle Puhger, Grace Or Mizuno, Carolyn M Davis, Brian Wiltgen, Mark von Zastrow, Joshua D Berke, Lin Tian. 
An expanded palette of dopamine sensors for multiplex imaging in vivo  (2020). Nature Methods

Paras R Patel, Pavlo Popov, Ciara M Caldwell, Elissa J Welle, Daniel Egert, Jeffrey R Pettibone, Douglas H Roossien, Jill B Becker, Joshua D Berke, Cynthia A Chestek, Dawen Cai. High density carbon fiber arrays for chronic electrophysiology, fast scan cyclic voltammetry, and correlative anatomy  (2020). Journal of Neural Engineering

Bon-Mi Gu, Robert Schmidt, Joshua Berke. Globus pallidus dynamics reveal covert strategies for behavioral inhibition  (2020). eLife

Jeffrey R Pettibone, Y Yu Jai, Rifka C Derman, Thomas W Faust, Elizabeth D Hughes, Wanda E Filipiak, Thomas L Saunders, Carrie R Ferrario, Joshua D Berke.  Knock-in rat lines with Cre recombinase at the dopamine D1 and adenosine 2a receptor loci  (2019). eNeuro

Ali Mohebi, Jeffrey R Pettibone, Arif A Hamid, Jenny-Marie T Wong, Leah T Vinson, Tommaso Patriarchi, Lin Tian, Robert T Kennedy, Joshua D Berke .  Dissociable dopamine dynamics for learning and motivation (2019). Nature
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Mohebi A, Pettibone J, Hamid A, Wong JM, Kennedy R, Berke JD .  Forbrain dopamine value signals arise independently from midbrain dopamine cell firing (2018). bioRxiv

Berke JD.  What does dopamine mean? (2018). Nature Neuroscience

Owen SF, Berke JD, Kreitzer A.  Fast-Spiking Interneurons Supply Feedforward Control of Bursting, Calcium, and Plasticity for Efficient Learning (2018). Cell

Mirzaei A, Kumar A, Leventhal D, Mallet N, Aertsen A, Berke JD, Schmidt R.   Sensorimotor processing in the basal ganglia leads to transient beta oscillations during behavior (2017). Journal of Neuroscience

Schmidt R,  Berke JD. A Pause-then-Cancel model of Stopping: Evidence from Basal Ganglia Neurophysiology (2016). Philosophical Transactions of the Royal Society B: Biological Sciences

D Angulo-Garcia, JD Berke, A Torcini. 
Cell assembly dynamics of sparsely-connected inhibitory networks: a simple model for the collective activity of striatal projection neurons (2016). PLoS Comput Biol 12 (2), e1004778

HJ Gritton, WM Howe, CS Mallory, VL Hetrick, JD Berke, M Sarter. Cortical cholinergic signaling controls the detection of cues (2016). Proceedings of the National Academy of Sciences 113 (8), E1089-E1097

Mallet N, Schmidt R, Leventhal D, Chen F, Amer N, Boraud T, Berke JD. (2016). Arkypallidal Cells Send a Stop Signal to Striatum. Neuron

Hamid A, Pettibone JR, Mabrouk OS, Hetrick V, Schmidt R, VanderWeele C, Kennedy RT, Aragona BJ, Berke JD (2015). Mesolimbic dopamine signals the value of work. Nature Neuroscience

Schmidt R, Leventhal DK, Mallet N, Chen F, Berke JD (2013). Canceling actions involves a race between basal ganglia pathways. Nature Neuroscience, doi:10.1038/nn.3456

Leventhal DK, Gage GJ, Schmidt R, Pettibone JR, Case AC, Berke JD (2012). Basal ganglia beta oscillations accompany cue utilization. Neuron, 73: 523-536. PDF

Gittis AH, Leventhal DK, Fensterheim BA, Pettibone JR, Berke JD, Kreitzer AC (2011). Selective inhibition of striatal fast-spiking interneurons causes dyskinesias. Journal of Neuroscience 31:15727-31. PDF

Berke JD. (2011). Functional properties of striatal fast-spiking interneurons.Front Syst Neurosci. 2011;5:45. Epub 2011 Jun 20. PDF

Gage GJ, Stoetzner CR, Wiltschko AB, Berke JD (2010). Selective activation of striatal fast-spiking interneurons during choice execution. Neuron 67: 466-79. PDF

​Wiltschko AB, Pettibone JR, Berke JD. (2010). Opposite effects of stimulant and antipsychotic drugs on the firing rates of striatal fast-spiking interneurons. Neuropsychopharmacology 35:1261-70.

Stoetzner CR, Pettibone JR, Berke JD. (2009). State-dependent plasticity of the corticostriatal pathway. Neuroscience, 165: 1013-8.

Pennartz CM, Berke JD, et al. (2009). Corticostriatal interactions during learning, memory processing and decision-making. Journal of Neuroscience, 29: 12831-12838.
 

Berke JD (2009). Fast oscillations in cortical-striatal networks switch frequency following rewarding events and stimulant drugs. European Journal of Neuroscience, 30: 848-859.  

Berke JD, Breck J, Eichenbaum HB (2009). Striatal versus hippocampal representations during win-stay maze performance. Journal of Neurophysiology, 101: 1575-1587.

Wiltschko AB, Gage GJ, Berke JD (2008). Wavelet filtering before spike detection preserves waveform shape and enhances single-unit discrimination. Journal of Neuroscience Methods 173: 34-40.

Berke JD, Hetrick V, Breck J, Greene RW (2008). Transient 23-30Hz oscillations in mouse hippocampus during exploration of novel environments. Hippocampus 18: 519-529.

Berke JD (2005) Participation of striatal neurons in large-scale oscillatory networks. In: The Basal Ganglia VIII. ed. P Bolam et al. Springer, New York.

Berke JD, Okatan M, Skurski JA, Eichenbaum HB (2004). Oscillatory entrainment of striatal neurons in freely moving rats. Neuron 43: 883-896.

Berke JD (2003). Learning and memory mechanisms involved in compulsive drug use and relapse. In: Drugs of Abuse: Neurological Reviews and Protocols ed. Wang J. Humana Press, Totowa, NJ.

Berke JD, Sgambato V, Lavoie B, Krause M, Hyman SE (2001). Dopamine and glutamate induce distinct striatal splice forms of Ania-6, an RNA polymerase II- associated cyclin. Neuron 32: 277-287.

Berke JD, Hyman SE (2000). Addiction, dopamine, and the molecular mechanisms of memory. Neuron 25: 515-532.

Berke JD, Paletzki RF, Aronson GJ, Hyman SE, Gerfen CR (1998). A complex program of striatal gene expression induced by dopaminergic stimulation. Journal of Neuroscience 18: 5301-10.

Breiter HC, Gollub RL, Weisskoff RM, Kennedy DN, Makris N, Berke JD, Goodman JM, Kantor HL, Gastfriend DR, Riorden JP, Mathew RT, Rosen BR, Hyman SE (1997). Acute effects of cocaine on human brain activity and emotion. Neuron
19: 591-611. PDF
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